Jupyter notebooks for data analysis

Overview

Teaching: 0 min
Exercises: 0 min

Questions

Objectives

• Benefits of notebooks for analysis

• Use a notebook and modify it

• How notebooks help in FAIR

Show a notebook (with nice descriptions cells) which:

• (if possible to get a sensible library/program) calls a code from command line to do some simple file processing (maybe one step from workflows workshop) that should show that it can replace commands lines while showing how exactly the programs/library well called
• reads in the results or excell files (in python)
• plots something from the results

• saves the figure to a file

• ask to run it
• ask to add some description (non coding cell)
• ask to change input file to another one and re-analysed it

I am a section

With a text.

After Figure source

I am a yellow info

And my text.

I am code

I am a problem

Defined here.

Solution

• I am an answer.
• So am I.

Attribution

Content of this episode was adopted after XXX et al. YYY.

Key Points