SBS-PhD-Induction-2022

Dealing with data

Induction workshop for PhD students from School of Biological Sciences at the University of Edinburgh

Dates

• 19th October 2022 13:00
• 24th October 2022 09:30
• 24th October 2022 14:00

Online workshop, Zoom link sent in the registration email.

Content

• Open Science and FAIR Principles
• Organising and Documenting Your Data
  • Introduction to metadata
  • Electronic Lab notebooks
  • Working with files
• Introduction to Data Management Planning
• Active Data Storage
• Data-related resources at the University

Contact

bio_rdm [@] ed.ac.uk

Recomended workshop

FAIR in (bio) practice
22-25 November in the afternoons
https://edcarp.github.io/2022-11-22_ed-dash_fair-bio-practice/

Other trainings

ED-DASH https://edcarp.github.io/Ed-DaSH/index.html

• statistics (intermediate, high-dimension, ML)
• command line
• conda and workflows

RDS training https://www.ed.ac.uk/is/data-training

Materials

PowerPoint slides can be found here
Click download button to get the file

Practical recipes and guides:

• https://faircookbook.elixir-europe.org/
• https://rdmkit.elixir-europe.org/

Choosing repositories

• BioRDM wiki
• https://fairsharing.org/

All the useful links from the workshop

The University Research Data Services

https://www.ed.ac.uk/information-services/research-support/research-data-service

Information about available services including centrally run trainings and learning materials.

BioRDM wiki

https://www.wiki.ed.ac.uk/display/RDMS

Biology-tailored resources related to data managment.

• Re-usable paragraphs for DMP
• List of recommended data repositories
• Practical guides to Benchling, DataStore, DataVault

DataStore

• https://www.ed.ac.uk/information-services/computing/desktop-personal/connect-uni-file-storage
• https://www.wiki.ed.ac.uk/x/tet_H

The network file system that MUST BE used for all research data

Sharepoint

https://uoe-my.sharepoint.com

Collaborative platform, recommended for co-writing documents and presentations - no more bouncing emails

UoE WIKI

https://www.wiki.ed.ac.uk

Free to use web-space, for simple home pages, project pages,
organizing files, collaborative documents
and even simple ELN

DMPOnline

https://dmponline.dcc.ac.uk

Tool that helps writing DMPS

Protocols.io

https://www.protocols.io/

Repository for storing and publishing laboratories protocols

UoE DataShare

https://datashare.is.ed.ac.uk/

The University respository for sharing public data